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Why? Did any physicist really doubt it? 4d QCD has been used for approximate calculations for about 45 years
Yes, people did. Well at least I did. We knew we can use QCD to compute loops and to some degree masses in the lattice. But there were serious doubts the underlying mathematical theory was sound. For many it didn't even matter. It would just mean that at those energies the theory is not even valid.

I am not certain on the extend of this proof but QED is probably not sound on it's own and we have been using that even longer. lambda phi^4 behind symmetry breaking and the higgs is strongly believed to be unsound on its own.

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